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Table 2 Clinical parameters for qMSP on cfDNA samples

From: Genome-Wide Methylation Sequencing to Identify DNA Methylation Markers for Early-stage Hepatocellular Carcinoma in Liver and Blood

Training cohort (n = 91)

Validation cohort (n = 89)

Group

Late-stage HCC

Early-stage HCC

Cirrhosis

Late-stage HCC

Early-stage HCC

Cirrhosis

N

29

30

32

24

37

28

Age, median

69

70

65

68

67

65

Gender, male

23 (79.3%)

23 (76.7%)

24 (75.0%)

18 (75.0%)

26 (70.3%)

16 (57.1%)

Cirrhosis

100%

100%

100%

100%

100%

100%

Etiology

 MASLD

10 (34.4%)

15 (50.0%)

10 (31.3%)

6 (25.0%)

17 (45.9%)

19 (67.9%)

 ALD

16 (55.2%)

14 (46.7%)

18 (56.3%)

12 (50.0%)

8 (21.6%)

4 (14.3%)

 HBV

0

0

0

0

0

0

 HCV

0

0

0

0

0

0

 Others

3 (10.3%)

1 (3.3%)

3 (9.4%)

6 (25.0%)

12 (32.4%)

5 (17.9%)

Tumor size, cm

4.8 (3.0–7.5)

2.8 (1.8–4.0)

NA

4.5 (3.5–6.0)

2.5 (2.2–3.6)

NA

BCLC Stage

 BCLC 0-A

0

30 (100%)

NA

0

37 (100%)

NA

 BCLC B

15 (51.7%)

0

NA

13 (54.2%)

0

NA

 BCLC C-D

14 (48.3%)

0

NA

11 (45.8%)

0

NA

AFP, ng/mL

7.7(4.6–55.2)

6.0(3.9–28.6)

4.2(3.4–5.4)

20.5(10.7–460.2)

9.0(5.5–15.2)

4.9(3.2–6.9)

PIVKA-II, mAU/ml

901(169–10,728)

196(82–971)

68(44–197)

645(345–2957)

269(107–618)

58(48–101)

ASAP/GAAD

2.35(0.21–3.68)

0.63(−0.04–2.56)

−0.47(−1.23–0.07)

1.73(1.14–5.07)

0.89(−0.07–1.51)

−0.52(−1.42–0.37)

  1. Abbreviations: HCC hepatocellular carcinoma, HBV hepatitis B virus, HCV hepatitis C virus, ALD Alcohol-related liver disease, MASLD metabolic dysfunction-associated steatotic liver disease, BCLC Barcelona Clinic Liver Cancer staging system, AFP α-fetoprotein, PIVKA-II protein induced by vitamin K absence II, age, sex, AFP, and PIVKA-II, ASAP/GAAD